Joystick settings in control panel

[NoStall]

Nice job Seamless, I bought this today and have played through the first two missions. Was working on Day three, Neptune, when I had to leave to go eat. Shut down game and Steam.
20 minutes later came back and fired up Steam and then the game and then the mission: All my joystick settings had changed back to default.
Have tried resetting them 5 times; 4 in game and 1x after closing the game and restarting it and making adjustments before launching mission. Settings will not hold. And yes, I clicked "Apply" and "Yes" every time.
I hope the solution is simple, and anyone else run into this and have an answer I would appreciate the help.
Using a Logitech Freedom 2.4, never had this problem before.

Edit:Kellius: My joystick appears to work just fine, at least for first two missions. You can probably add it to the list of ones that work.

[Kelius]

This issue should be resolved in the next patch, which should be pushed out sometime tomorrow. Sorry about the clobbering!

[NoStall]

This issue should be resolved in the next patch, which should be pushed out sometime tomorrow. Sorry about the clobbering!

Kelius, Seamlessstocks, and others of the dev. team: Thank you.
I have purchased hundreds if not thousands of dollars of games, often on first day launch, and have never seen such good response from the company and/or developers as I have seen here. You folks are doing a great job.
To all naysayers (and I must admit I have been in this class of gamers a time or two); PCGamer, about two or three issues ago, published an excellent ediorial article about the tribulations and problems developers have to endure, and compromises made, in order to get a game to market. Might want to read it, it changed my viewpoint quite a bit.
And yes, there are some big-name games out there that still have bugs, and their dev's don't seem to care:I don't buy from those companies anymore unless it is at a HUGE discount (loss-leader).